VSO let you use encode in new driver by copy some file from old driver into their soft install folder, it is not safe at all, maybe it can work in recent new driver, but after Nvidia update the drivers on and on, the file from old driver may can not be coexistence. It's a fake way, IT ACTUALLY STILL USE OLD DRIVER.
Driver 332.50
DVDFab encoding 50fps with CUDA enabled for decode and encode
VSO Converter encoding 90fps with CUDA enabled for encode only
Could you please post the conversion parameters here? e.g. output resolution, audio, video bitrate... Or attached the mediainfo of both files.
Wilson